Category: Windows / Science / CAD

License: Trial

Limitations :

OS: Windows 2K/XP

Size: 47.23 MB (49,516,032 bytes)

Introduction: CLC Protein Workbench is a science application tool that will allow you to analyse proteins. CLC Protein Workbench provides a wide range of advanced protein anlyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. This 2 x 2 weeks of fully functional demo includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application. Here are some key features of "CLC Protein Workbench": · Integrated 3D molecule view · Transmembrane helix prediction · Antigenicity · Secondary protein structure prediction · PFAM domain search · Web-based prediction of signal peptides and their cleavage sites (SignalP - the best tool available) · Hydrophobicity analyses and graphs · Protein charge analysis and graphs · Reverse translation from protein to gene (a number of translation tables) · Interactive translations of DNA and RNA to protein (both single sequences and alignments) · Proteolytic cleavage detection · Report of protein statistics (one or more proteins in each report) · Comprehensive report including a range of protein analyses in one document · Search for sequence matches · Motif search for basic patterns · Motif search using regular expressions · Motif search with ProSite patterns · Pattern discovery (unknown patterns) · Web based sequence search using BLAST · BLAST on local databases · Build local BLAST databases · GenBank Entrez searches · UniProt searches (SwissProt/TrEMBL) · PubMed lookup · Web based lookup in UniProt, NCBI, and Google · Full integration of data input, data management, calculation results, and data export · Detailed history log · All types of files can be saved in local projects, and launched from the program · Import and export of data in a large number of file formats · Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects · DNA, RNA and protein sequence editor displaying both linear and circular molecules · Joining multiple sequences into one · Joining multiple alignments into one · DNA, RNA, and protein alignment editor · Interactive logo graphs along both DNA, RNA and Protein alignments · Batch processing of analyses on multiple sequences in one work-step · Advanced re-alignment and fix-point alignment option · Manual annotation of sequences · Dot plot based analyses · Local complexity region analyses and complexity plots · Gap fraction graphs · G/C content analysis and graphs Requirements: · 256 MB RAM required Limitations: · 2 x 2 weeks of fully functional demo